Accessing Row Information in PyTorch Sparse Tensors: Alternatives to torch.Tensor.row_indices()
Sparse Tensors
PyTorch supports sparse tensors, which are memory-efficient representations for tensors with a lot of zeros. These tensors have special data structures to store only the non-zero elements and their corresponding indices.Accessing Row Indices
There isn't a direct way to get all row indices of a sparse tensor. However, depending on the sparse tensor format (e.g., CSR, COO), you can access relevant information:- CSR (Compressed Sparse Row)
For CSR tensors,torch.Tensor.crow_indices()
can be used. This method returns a 1D tensor with compressed row-wise indices. It essentially tells you the starting position of each row's non-zero elements within the main data structure.
- CSR (Compressed Sparse Row)
Alternative for Row Selection
If you want to select specific rows from a sparse tensor, indexing with a tensor of boolean values works. Create a mask tensor where True indicates rows to keep and False for rows to discard. Then, use this mask to index the original sparse tensor.
import torch
# Example sparse tensor (COO format)
sparse_tensor = torch.sparse_coo_tensor([[1, 0, 3], [0, 2, 0]], torch.tensor([1, 2, 3]))
# Accessing row indices indirectly (COO)
# This returns a tensor with starting index of each row's non-zero elements
row_indices = sparse_tensor.indices()[0]
print(row_indices)
# Selecting rows using boolean mask
row_mask = torch.tensor([True, False, True]) # Keep rows 0 and 2
selected_rows = sparse_tensor[row_mask]
print(selected_rows)
- We create a COO format sparse tensor with non-zero elements.
sparse_tensor.indices()[0]
returns a 1D tensor with the starting index of each row's non-zero elements. This works for COO format, but not directly for CSR.
Selecting Rows using Mask
- We create a boolean mask tensor (
row_mask
) where True indicates rows to keep (0 and 2 in this case). - Indexing the sparse tensor with this mask (
sparse_tensor[row_mask]
) selects the desired rows based on the mask. This approach works for any sparse tensor format.
- We create a boolean mask tensor (
Accessing Starting Indices of Non-Zero Elements
- CSR format
Usetorch.Tensor.crow_indices()
. This returns a 1D tensor with the starting index of non-zero elements for each row.
Extracting Specific Rows
- Boolean Masking
This is a versatile approach that works for all sparse tensor formats. Create a boolean mask tensor whereTrue
indicates rows to keep andFalse
for discarding. Then, use this mask to index the original sparse tensor:
sparse_tensor = ... # Your sparse tensor
row_mask = torch.tensor([True, False, True]) # Keep rows 0 and 2
selected_rows = sparse_tensor[row_mask]
- torch.sparse.sum with dimension argument
If you only need the sum of elements along a specific row, you can usetorch.sparse.sum(sparse_tensor, dim=0)
. This will provide a dense tensor with the row sums.
- For specific use cases, you can iterate through the non-zero elements of the sparse tensor using
sparse_tensor.sparse_coo_tensors()
(if COO format) or similar methods depending on the format. This approach might be less efficient for large tensors.